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  • Information about the course

    Institute of Natural and Life Sciences
    Department of Biotechnology
    Course: Biotechnology and Applictions
    licence Program Title:  Biotechnology

    Semester: S04

    Course Unit Title: Fundamental Teaching Unit 01

    Number of hours of personal work for the student: 67,5 hours

    Number of credits: 6

    Course Coefficient: 3

    VHS: 15 weeks

    Evaluation Method: 40% Continuous Assessment, 60% Final Exam

    sunday:  course +   Directed Study

    Monday: course 

    Course  : Dr. SAHLI MOHAMED

    Directed Study:  Dr. SAHLI MOHAMED



    • CONTACT

       Dr. SAHLI MOHAMED

      E-Mail : m.sahli@centre-univ-mila.dz 

                    msahli3075@gmail.com

                   

      • Course Description

        Course Description:

        This module offers a practical and application-oriented exploration of biotechnology, emphasizing how biotechnological innovations are used across various sectors. Students will gain insight into the principles behind modern biotechnology and its real-world uses in agriculture, medicine, industry, and environmental science. The course highlights both classical and advanced technologies such as fermentation, recombinant DNA technology, bioprocessing, and molecular diagnostics. Ethical, regulatory, and safety aspects are also discussed to provide a balanced understanding of biotechnology’s impact on society.

        Key Topics Include:

        • Introduction to industrial and agricultural biotechnology
        • Genetic engineering and recombinant DNA technology
        • Bioprocessing and microbial applications
        • Biotechnology in medicine: diagnostics, vaccines, and therapeutics
        • Environmental biotechnology and sustainability solutions
        • Innovations and current trends in biotechnology

        Learning Outcomes:

        By the end of the module, students will be able to:

        1. Explain the core applications of biotechnology in various industries.
        2. Apply basic biotechnological techniques and interpret their results.
        3. Assess the benefits and risks associated with biotechnological products and processes.

        • Course Objectives

          Course Objectives: Biotechnology and Applications

          By the end of this course, students will be able to:

          1. Understand fundamental biotechnological concepts and their relevance in modern scientific and industrial contexts.
          2. Identify and describe major biotechnological tools and techniques, including genetic engineering, fermentation, and molecular diagnostics.
          3. Explore the practical applications of biotechnology in fields such as agriculture, healthcare, environmental protection, and industry.
          4. Analyze case studies and real-world examples to evaluate how biotechnology addresses global challenges.
          5. Examine ethical, legal, and biosafety considerations associated with the development and use of biotechnological products.
          6. Develop critical thinking and problem-solving skills related to biotechnology research and its societal impact.
          7. Stay informed on emerging trends and innovations shaping the future of biotechnology, such as synthetic biology.

          • Course Content

            1.  The Economic Significance of Microorganisms

            2.  Use of Microorganisms in Food Fermentations
            2.1. Bread
            2.2. Cheese
            2.3. Milk
            2.4. Others

            3.  Microbial Metabolites of Economic Importance
            3.1. Enzymes
            3.2. Ethanol
            3.3. Citric Acid
            3.4. Antibiotics
            3.5. Others

            4.  Application of Biotechnology in the Medical Field
            4.1. Hormone Production
            4.2. Vaccine Production

            5.  Application of Biotechnology in the Animal Field
            5.1. Embryo Biotechnology
            5.2. Animal Cell Culture for Industrial Production

            6.  Application of Biotechnology in the Medical Field (continued)
            6.1. Historical Overview of In Vitro Culture Development
            6.2. Totipotency
            6.3. In Vitro Culture and Its Use


            • Chapter 01 The Economic Importance of Microorganisms

              Chapter 01

              The Economic Importance of Microorganisms

              1.1. Overview of Microorganisms

              The term "microorganism" comes from the Greek words for "small organism." Indeed, microorganisms are tiny living organisms that are invisible to the naked eye and are found almost everywhere on Earth. They play a crucial role in nature but also cause many problems in the food industry. Their metabolic activity changes the composition of the food they infect.
              The term "microorganism" refers to bacteria, some fungi (molds, yeasts), and sometimes viruses (according to certain biologists). These organisms form a very diverse group (including both prokaryotes and eukaryotes), with the only common characteristics being their size and shape.

              1.2. Different Types of Microorganisms

              A) Bacteria

              Bacteria are single-celled prokaryotic microorganisms (without a nucleus). Their genome consists of circular DNA (one chromosome and possibly plasmids). Bacteria can synthesize their own macromolecules and cell components from nutrients. They range in size from 0.1 to 10 micrometers and have a variety of shapes. For example, their cells can be round (cocci), elongated (bacilli), intermediate (coccobacilli), or spiral. Bacteria are found in most environments on Earth and reproduce through binary fission, where the parent cell divides into two identical daughter cells.

              B) Fungi

              Like bacteria, fungi are found in soil, water, and air. The term "fungi" includes edible and non-edible species such as mushrooms, morels, and others, which have a cap and a stem. However, we will focus on microscopic fungi, which are divided into yeasts and molds.

              B.1. Yeasts

              Yeasts are microscopic (6 to 10 microns), unicellular, eukaryotic fungi involved in the fermentation of animal or plant materials by converting sugars into alcohol and carbon dioxide. They mainly reproduce asexually (through budding or fission) and some can reproduce sexually. Yeasts can live in both aerobic (respiration) and anaerobic (fermentation) conditions. Yeast fermentation can cause swelling in some food products and result in an alcoholic fermentation taste.

              B.2. Molds

              Molds are microscopic (1 to 60 micrometers), filamentous, unicellular or multicellular, eukaryotic heterotrophic fungi (which obtain nutrients by breaking down organic matter or parasitizing a host). Molds reproduce asexually by releasing spores or sexually (in some species). A mold consists of a vegetative part that absorbs nutrients from the environment and reproductive structures used for multiplication. When food is stored improperly, molds can contaminate and degrade the food. Some molds can even release mycotoxins into the food, which can have serious health effects.

              C) Viruses

              A virus is a microscopic infectious biological entity that contains only one type of nucleic acid (DNA or RNA). It can only multiply by entering a cell. The size of viruses ranges from 20 to 300 nm.

              1.3.  Factors Influencing the Growth of Microorganisms

              Several factors can influence the development and growth rate of bacteria.

              A)    Nutritional Requirements

              For microorganisms to grow, the environment must contain all the necessary elements for their development. Bacteria need water, a carbon source, oxygen, hydrogen, nitrogen, sulfur, and phosphorus, which are mainly provided by sugars like glucose and mineral salts. Molds also require water but are less demanding. In fact, when the ambient humidity is high, some molds can attack dry foods like powdered milk or cereals.

              B)    Temperature Influence

              Temperature has a significant impact on microorganism growth because cold can slow down microbial metabolism and even cause high mortality during freezing. Most bacteria grow rapidly between 20 and 45°C, but three types of bacteria are classified based on their optimal temperature:

              • Psychrophiles: Their optimal growth temperature is below 20°C (they are involved in the degradation of dairy products and foods stored in cold conditions).
              • Mesophiles: Their optimal growth temperature is between 20 and 45°C (these are the bacteria that can be harmful to humans).
              • Thermophiles: Their optimal growth temperature is above 60°C. Refrigeration of food is effective in preventing foodborne illnesses because human body bacteria (mesophiles) grow slowly at temperatures below 15°C. Likewise, most molds grow well between 15 and 25°C and stop growing under refrigeration, except for some species.

              C)    pH Influence

              Microorganisms react differently to pH. Yeasts and molds can tolerate a wide pH range for growth (from 2 to 8.5), with an optimal pH between 4 and 6. Most bacteria multiply in neutral environments. When the pH is lower than 4.5, bacterial growth is inhibited. This is why acidic foods (such as lemons, vinegar, tomatoes, and oranges) preserve better, and vinegar is used for preserving some foods. Molds and yeasts grow on the surface of acidic fruits, while bacteria colonize meats and fish, which have a neutral pH.

              D)    Oxygen Influenc

              Some bacteria only grow in the presence of oxygen (aerobes), while others only grow in the absence of oxygen (strict anaerobes). Others can grow in both oxygen-rich and oxygen-free environments (facultative anaerobes). Fungi are aerobic organisms, but some can grow anaerobically and thus deeper within foods.

              E)    Salt Influence

              Since prehistoric times, salt has been used to preserve meat and fish because it reduces the multiplication of microorganisms. Salt draws in water and retains it. As a result, microorganisms are deprived of water and cannot grow. Salt thus has a bacteriostatic effect on most bacteria. However, some bacteria, known as halophiles, require high concentrations of salt to survive.
              Most molds can tolerate high levels of salt and sugar, meaning that very salty cured meats, jams, and candies can be infected.

              F)     Nutrient Influence

              The composition of food favors the growth of different types of bacteria. For example, an opened fruit juice left at room temperature promotes yeast growth and causes alcoholic fermentation. In contrast, fresh milk will undergo lactic fermentation by bacteria.

              The Economic Importance of Microorganisms

              Microorganisms have been used for thousands of years in food processing (e.g., alcoholic beverages, bread, cheese). More recently, with the development of biotechnology, new processes have been created to use microorganisms for breaking down organic and mineral compounds to clean soil, water, and air. They are also used to produce valuable primary and secondary metabolites with important biological activities.

              In the energy sector, where there is a need for renewable energy, microalgae are being explored as a promising source for biofuel production.

              To make biofuels economically and environmentally viable, several challenges must be addressed:

              ·         Reducing production costs.

              ·         Optimizing yield through genetically modified microorganisms.

              ·         Implementing safety measures to control the spread of microalgae in large-scale cultivation.

              ·         Studying the impact of microalgae farming on greenhouse gas emissions.

              ·         Identifying suitable locations for large-scale microalgae cultivation.

              For profitable biomass production, microalgae are grown using different types of photobioreactors. To make biofuels commercially viable, the production cost should ideally be around €1 per kg of biomass.

              Industrial Biotechnology

              Industrial biotechnology mainly relies on fermentation and biocatalysis. Microorganisms (yeasts, algae, bacteria) or their components (mainly enzymes) act as small factories for production processes.

              Biocatalysis

              To speed up biochemical reactions, enzymes are used. They work quickly and precisely while being environmentally friendly, unlike chemical catalysts that require harsh conditions to function.

              Enzymes act like tiny machines that bring molecules together to react. Similar to a key fitting into a lock, each enzyme works only on specific substances. Large-scale biocatalysis is replacing many polluting processes in industries such as paper, leather, textiles, and detergents.

              Fermentation

              In a controlled, oxygen-free environment, microorganisms (such as molds, yeasts, and bacteria) – whether genetically modified or not – transform organic substances like sugars and oils into a wide range of products. Choosing the right microorganism, monitoring its metabolism and growth, and scaling up production are key factors in fermentation.

              Some well-known types of fermentation include:

              ·         Alcoholic fermentation (conversion of sugars into alcohol).

              ·         Acetic fermentation (conversion of alcohol into vinegar).

              ·         Lactic fermentation (conversion of milk into cheese).

              Fermentation has many industrial applications, including food production, chemistry, pharmaceuticals, agriculture, and environmental management.


            • CHAPTER 02: Use of Microorganisms in Food Fermentations

              Chapter II:
              Use of Microorganisms in Food Fermentations

              2.1. Bread

              The four ingredients used in bread-making are flour, water, salt, and yeast or sourdough. For 100 kg of flour, the ingredient proportions are 62 liters of water, 2 kg of yeast, and slightly less than 2 kg of salt. These proportions may vary depending on the type of bread desired. Traditional bread, for example, is often more hydrated, with between 65 and 70 liters of water per 100 kg of flour.

              2.1.1. Characteristics of the Ingredients:

              • 2.1.1.1. Flour: It is the essential element. Firstly, mixing flour with water allows the formation of dough. Secondly, the quality, characteristics, and properties of flour have a direct impact on bread. Flour determines the bread’s taste, color, and texture. Bakers sometimes use carefully formulated ready-made blends from millers, called "mixes," designed to produce specific types of bread (such as multigrain bread). Each type of bread requires a specific type of flour.
              • 2.1.1.2. Water: By moistening starch and gluten particles, water enables the formation of an elastic gluten network that binds all other flour components together. Without water, the dough would not be able to retain carbon dioxide during fermentation. Water plays a crucial role in the dough’s plasticity and helps dissolve the salt.
              • 2.1.1.3. Salt: It plays a very important role in the "chemistry of bread." Salt enhances the dough’s consistency; when incorporated at the beginning of kneading, it slows down oxidation, thus preventing loss of flavor. It contributes to the bread’s taste, enhances the crust’s color, and affects its preservation.
              • 2.1.1.4. Yeast: Baker’s yeast is a microscopic fungus of natural origin, Saccharomyces cerevisiae. One gram of fresh yeast contains 9 to 10 billion cells. Yeast can survive with or without air, and its preferred food is simple sugar, glucose. This biological agent allows the dough to rise by transforming sugars into carbon dioxide and alcohols, which evaporate during baking. Without yeast, bread would be flat.

              The storage conditions of yeast are very important: if stored at too low or, more critically, too high a temperature, it loses its fermentation power.

              2.1.2. The Eight Stages of Breadmaking

              Artisan bakers oversee the entire bread-making process, from production to final sale to the consumer. Each baker has their own technique, but the main stages of breadmaking remain the same.

              2.1.2.1. Kneading:

              The baker mixes all the dough ingredients. The gluten in the flour absorbs the water poured into the mixing bowl. The dough becomes elastic and traps air. If a mechanical mixer is used, it facilitates this crucial stage, but the baker must remain vigilant and closely monitor the process. Different kneading methods are possible. Slow-speed kneading produces a less developed bread, while intensified kneading, which is longer and has a higher rotation speed, results in very well-developed bread with a thin crust. Improved kneading, a balance between these two methods, lasts 10 to 15 minutes and includes rest periods of 2 to 3 minutes. For proper fermentation, the baker must ensure the dough reaches a final temperature of 23 to 25°C; if necessary, the water is cooled.

              2.1.2.2. First Fermentation (Pointage):

              Before dividing the dough, the baker lets it rest in the mixing bowl. This step, known as pointage, is crucial for developing the bread’s aroma. The production of carbon dioxide begins, causing the dough to rise and its qualities to improve, making it more elastic. For traditional bread, this step takes longer. The baker’s experience helps determine when the dough is ready, as every dough reacts differently based on daily variables (such as air humidity). The baker touches the dough with their fingertips and decides if it's time to move to the next stage.

              Note: No machine, no matter how advanced, can replace the baker’s hand.

              2.1.2.3. Scaling (Pesée):

              Once the dough has finished fermenting, the baker divides it into dough pieces (pâtons) of the desired weight. A dough divider is often used, though it slightly reduces the dough’s flexibility. To compensate for this, the baker allows the dough to rest again.

              2.1.2.4. Shaping (Façonnage):

              By hand or with a machine, the baker shapes each dough piece to give it the desired bread form. This movement is called la tourne. The shaped loaves are placed on baking nets or in small cloth-lined baskets designed for their shape (long for baguettes, round for country loaves).

              2.1.2.5. Proofing (Apprêt):

              Proofing is another resting period where the shaped dough undergoes further fermentation. During this stage, the yeast continues feeding on the sugars in the dough, releasing carbon dioxide. Trapped within the gluten structure, the gas causes the dough to rise, tripling its volume. The proofing time depends on temperature, yeast quantity, kneading method, and initial fermentation time, ranging from one to four hours. Some bakers use temperature-controlled proofing chambers.

              2.1.2.6. Loading into the Oven (Enfournement):

              Meanwhile, the oven is preheated to 250°C. Before placing the dough inside, the baker injects steam to keep the bread from drying out, ensuring a thin, golden crust. Before baking, the baker scores the dough’s surface with a blade to allow carbon dioxide to escape.

              2.1.2.7. Baking (Cuisson):

              Baking time varies depending on the bread's shape and weight, ranging from 12 to 50 minutes. In the early stages of baking, the dough continues to rise as the crumb forms and solidifies. The crust hardens and develops its final color.

              2.1.2.8. Unloading from the Oven (Défournement):

              The bread is carefully removed from the oven as it is fragile while still hot. It must cool properly to allow moisture and carbon dioxide to escape. During this period, the loaves should be stored in a dry, well-ventilated room.

              2.1.3.Role of Microorganisms in Breadmaking

              Bread is made from flour, yeast or sourdough, salt, and water. Sourdough is a fermenting dough with an acidic reaction. It contains an acidifying microflora, primarily composed of yeasts (Saccharomyces cerevisiae).

              The yeast Saccharomyces cerevisiae plays a crucial role during the kneading of the bread dough. It produces chemical substances that modify the structure of gluten, thereby altering the dough’s texture. The yeast breaks down sugars and converts them into carbon dioxide and alcohol, causing the dough to rise. During baking, the carbon dioxide bubbles remain trapped, while the alcohol evaporates. This process gives the bread its final texture.

              2.2. Cheese Making

              Cheeses are made from different types of milk (sheep, cow, goat), either pure or mixed. Originally, cheese making was a way to preserve milk, allowing only the solid part of the milk to be stored after transformation. The process involves several steps depending on the characteristics of the final product desired.

              2.2.1. What is Lactic Fermentation?

              Lactic fermentation is a chemical reaction between bacteria and milk. The bacteria consume lactose (the sugar in milk) and produce lactic acid, which gradually coagulates casein (the milk protein). The fermentation process stops when the mixture is refrigerated

              2.2.2. Steps of Cheese Making

              2.2.2.1. Coagulation: Lactic ferments or rennet are added to the milk to cause coagulation, dividing it into two parts:

                • Curd (solid part), used to make cheese.
                • Whey (liquid part), often used as animal feed.

              2.2.2.2. Draining: The curd contracts, and the whey is drained. This separation happens naturally but can be accelerated by stirring, cutting, or heating.

              2.2.2.3. Molding: The curd is shaped using perforated molds or by pressing it into cloth-lined wooden or other material frames.

              2.2.2.4. Pressing: This step removes excess water by applying weight to the mold. It is optional and depends on the type of cheese being produced.

              2.2.2.5. Salting: Salt is either incorporated into the cheese or applied to its surface to control the development of specific microorganisms.

              2.2.2.6. Aging: For fresh cheeses, the process ends after draining. However, for other cheeses, the aging process begins, lasting from several days to months. During this period, fermentation transforms the curd into cheese, giving it its flavor and aroma. Cheese is carefully handled (turned, brushed, etc.), and temperature and humidity significantly affect aging, determining the final taste and texture.

              This final stage occurs in a cellar, where the development of aging agents is monitored and controlled depending on the type of cheese being produced.

              2.2.3.      Examples of Microorganisms Used in Cheese Making

              • Camembert : Penicillium camembertii
              • Munster: Washed with salted water, Brevibacterium linens
              • Roquefort: Penicillium roqueforti, requires oxygen for growth
              • Emmental: Two bacteria work together—one (a lactic bacterium) produces lactate, while the other (a propionic bacterium) consumes it and releases CO₂, forming characteristic holes in the cheese. Microorganisms also play a role on the cheese surface.

                                                                  Camembert                                                                                        Emmental

              2.2.2.      Factors Controlling the Development of Microorganisms

              The development of these microorganisms depends on:

              • pH: Microorganisms are more or less sensitive to acidity. This factor is used as early as the coagulation stage to prevent the growth of pathogens.
              • Salting: This affects the amount of free water available for microorganisms.
              • Humidity (Hygrometry): This refers to the moisture content in the air (the amount of water in gaseous form). In cheese-aging cellars, humidity is usually high (around 80–95%). Lowering humidity limits the growth of bacteria, then yeasts, and finally molds.
              • Oxygenation: Proper aeration promotes the development of aerobic microorganisms.
              • Temperature: The temperature in the cellar is maintained between 10 and 12°C to support microbial activity.

              2.2.3.      Conclusion

              In cheese production, all types of microorganisms play a role. They serve various functions, including protecting the cheese from harmful microorganisms by acidifying the environment. During aging, they are essential in transforming the cheese, giving it its distinct taste, texture, and character.

              2.3. Milk:

              2.3.1. Milk composition

              Milk is a complex liquid primarily composed of water and four key constituents, whose proportions vary depending on species and breeds. For example, the average composition of cow’s milk is as follows:

              • Water : 87.5%
              • Carbohydrates : 4.9%
              • Lipids: 3.6%
              • Proteins: 3.4%
              • Minerals: 1%.

              2.3.2. Dairy products

              Dairy products can be made from cow’s milk, goat’s milk, or sheep’s milk. There is a wide variety of dairy products, including:

              • Cream, either raw or pasteurized, obtained after skimming the milk.
                • “Cream”: at least 30% fat content in milk
                • “Light cream”: at least 12% fat content
              • Butter, obtained after cream maturation and churning. It must contain 82% fat, 16% water, and 2% non-fat dry matter.
              • Yogurt (or yoghurt), obtained by fermenting milk with Lactobacillus bulgaricus and Streptococcus thermophilus bacteria. Pasteurization is mandatory. Fermented milk using other bacteria is not considered yogurt.
              • Fresh cheeses (White cheese , a small creamy fresh cheese, etc.), which are non-aged cheeses obtained through lactic fermentation.
              • Dairy desserts, composed of at least 50% milk (dessert creams, rice pudding, etc.).
              • Cheeses, made by coagulating milk, draining the curd, and sometimes undergoing an aging process. There are eight families of cheese:
                • Processed cheese
                • Fresh cheese
                • Soft cheese with a bloomy rind
                • Soft cheese with a washed rind
                • Blue cheese
                • Cooked pressed cheese
                • Uncooked pressed cheese
                • Goat cheese.

               2.3.3. Milk Quality and Yield:

              The quality of milk collected on farms can be analyzed based on the following criteria:

              • Physical quality: The milk must be free from any impurities.
              • Chemical quality: Fat and protein content.
              • Bacteriological quality: Enumeration of total aerobic mesophilic flora, which should be as low as possible.
              • Absence of pathogenic germs (Brucella, Listeria, etc.).

              2.3.4. Factors Influencing Yield Improvement:

              Milk yield improvement mainly depends on the following factors:

              Quality of raw materials: Optimization of animal feed, livestock selection, milking hygiene, and milk storage cleanliness.

              Control of manufacturing processes: Monitoring acidification, temperature, etc.
              Proper adjustment and functioning of equipment (e.g., skimmers).

              The conversion yield is a crucial criterion for assessing the profitability of a dairy production unit.


               

              Dairy Products

              Milk Quantity Required

              Cow’s Milk:

              1L of cream

              10L of milk

              1kg of butter

              20L of milk

              1kg of fresh cheese

              2-3L of milk

              8 pots of yogurt (125g each)

              1L of milk

              1kg of aged pressed cheese

              10-12L of milk

              Goat’s Milk:

              1kg of fresh lactic cheese

              6-7L of milk

              1kg of semi-dry lactic cheese

              8L of milk

              1kg of dry lactic cheese

              9.5L of milk

              1kg of pressed cheese

              10-11L of milk

              Sheep’s Milk:

              1kg of lactic cheese

              3-4L of milk


              Once collected from farms, the milk is transported to the dairy where it will be processed into consumer milk and dairy products. However, before being processed, the milk arriving at the factory must go through a reception process. The reception takes place in a dedicated room and involves two operations: measuring and pouring.

              The milk is then examined, tasted, and, if necessary, a sample is taken to measure its acidity, ensuring that acidic milk unfit for consumption is set aside.

              2.3.5. Milk Treatments

              Raw milk, as collected from the farm, can only be stored in the refrigerator for up to 48 hours and is only safe for consumption if boiled. Therefore, to extend its shelf life and make it directly consumable, this milk, which is transported to the dairy in a refrigerated truck (4°C), must undergo thermal and physical treatments.

              2.3.5.1. Standardization

              Standardization is the first treatment applied to raw milk. Since milk composition varies depending on diet, seasons, and cow breeds, its fat content (FC) can range from 30 to 70g/L.

              A standardizing separator is used to unify the composition of milk from different farms and to adjust the fat content according to legal requirements for consumer milk and dairy products. This process involves separating the cream from the milk by centrifugation and then reintroducing it according to the required fat content:

              Whole milk is obtained by reintroducing more than 3.25% fat.

              Semi-skimmed milk is obtained by reintroducing approximately 1.7% fat.

              Skimmed milk is obtained by reintroducing 0.1% to 0.3% fat.

              Standardization allows milk to be artificially adjusted to a fixed fat content while ensuring it retains sufficient nutritional value.

              2.3.5.2. Homogenization

              This treatment, which follows standardization, aims to prevent fat from rising to the surface, which could disrupt milk flow or cause deposits on the packaging during subsequent thermal preservation treatments. The process is simple: it involves breaking fat globules into fine, uniform particles using pressure.

              Depending on the required shelf life and bacteriological condition, the standardized and homogenized milk then undergoes thermal treatments: either pasteurization or sterilization.

              2.3.5.3. Pasteurization

              Pasteurization is a thermal treatment designed to eliminate pathogenic germs that cause diseases. There are two types of pasteurization:

              Low-temperature slow pasteurization, where the milk is heated for 30 minutes at a temperature between 63 and 65°C or for 5 minutes at 68°C.

              High-temperature pasteurization, where the milk is heated for 15 seconds at a temperature between 72 and 75°C and then immediately cooled.

              Since pasteurized milk is not sterile, it must be immediately cooled to 3°C. Afterward, the milk is pressurized, meaning it is stored at normal atmospheric pressure and bottled. This results in pasteurized milk that can be stored in the refrigerator for up to 7 days.

              2.3.5.4. Sterilization

              Unlike pasteurization, this thermal treatment destroys all milk germs, whether pathogenic or not. Milk sterilized using the classic method is heated to 115°C for 15 to 20 minutes and can be stored for 4 months. As for Ultra-High Temperature (UHT) sterilized milk, it is heated to 140°C for 2 to 3 seconds and can be stored for 3 months.

              Ultimately, all these thermal and physical treatments make it possible to produce a wide range of consumer milk products available in stores.


                                                                                                                Fig 01: Cow's milk cycle to marketing.

              2.4. Others

              2.4.1. Lacto-Fermented Vegetables

              Lactic fermentation is not only used for preserving dairy products; it also allows for the preservation of mushrooms and various vegetables such as cabbage, beetroot, carrot, beans, onion, etc. This technique involves preserving vegetables by promoting the development of lactic acid bacteria, which acidify the environment and inhibit the growth of undesirable organisms.

              For fermentation to occur, all the necessary conditions for the development of lactic acid bacteria must be met. Vegetables must provide sugar, B-group vitamins, and minerals. Since fermentation takes place in an anaerobic environment, oxygen must be eliminated; to achieve this, vegetables are often covered with salted water (as salt inhibits bacteria responsible for vegetable decomposition). Finally, the temperature should be between 18 and 22°C at the beginning of fermentation.

              Fermentation then proceeds through three phases:

              • Pre-fermentation, lasting 2–3 days, during which various microorganisms develop, leading to the decomposition and softening of the vegetables.
              • Fermentation, which begins when lactic acid bacteria dominate over other microorganisms.
              • Storage, when the pH drops below 4. At this stage, undesirable microorganisms can no longer develop, and new flavors emerge.

              The vegetables can then be preserved for at least a year, even if the temperature rises above 10°C. This preservation method is not only economical, as it requires no energy input, but also beneficial to health since lactic acid bacteria produce numerous vitamins and lactic acid, which has various digestive benefits.

              2.4.2. Acetic Fermentation

              Acetic acid is formed by the oxidation of alcohol through the oxygen in the air. Wine, beer, cider, and generally all fermented alcoholic liquids turn sour when exposed to air. Louis Pasteur, relying on the experiments of vinegar makers of his time and on the effects of fermentation, determined the nature of the ferment involved. He demonstrated that the ferment is a living organism, which he named Mycoderma aceti (vinegar mother). He observed its multiplication in all directions and conducted numerous experiments to prove that Mycoderma aceti was the sole ferment responsible for vinegar production. The simplified acetic fermentation reaction is:

              CH₃-CH₂-OH + O₂ → CH₃-COOH + H₂O + Energy

              2.4.2.1. Vinegar Production

              There are several methods for producing vinegar, one of which is the Orléans method. This method involves cultivating Acetobacter aceti by mixing wine and vinegar in a ventilated barrel. The bacteria primarily develop at the air-liquid interface, meaning on the surface. This is a static culture method. Today, this method is used to produce traditional and high-quality vinegar.



              Fig 02: the bacterium Acetobacter aceti.

              Since Pasteur's research, the bacterium Acetobacter aceti has been cultivated in a controlled manner for industrial vinegar production. The fermentation process has been accelerated; whereas it previously took three weeks, it is now possible to produce large quantities of vinegar in just 24 hours.

              The industrial method involves using a bioreactor that operates with a high level of aeration and bacteria immersed in the culture solution. Industrial vinegar production follows different processes, summarized in the following diagram:



              Fig 03: Diagram showing the different stages of vinegar production.

              Vinegar can be made from various raw materials, including grapes, rice, apples, berries, cereals, whey, or honey.

              Legislation regarding the designation of vinegar varies by country:

              • In Europe, the acetic acid concentration must be at least 60 g/L.
              • In the United States, it must be at least 40 g/L.



            • CHAPTER 03: Microbial Metabolites of Economic Importance

              Chapter 03 :

               Microbial Metabolites of Economic Importance

              3.1. Enzymes

              • Enzymes are biological catalysts of complex protein nature. They are purified from various biological raw materials. Only microbial enzymes produced by fermentation have experienced significant expansion and are prepared industrially, as microorganisms offer numerous advantages as a source of enzymes: exponential growth and availability.
              • For the production of an industrial enzyme, the selection of the appropriate strain is crucial, especially since, in most cases, applications for food purposes have seen significant development.

              3.1.1. Isolation and Selection of Microbial Enzyme-Producing Strains

              Microorganisms capable of producing enzymes that degrade certain compounds are generally found in environments where these substances are abundant. For example, microorganisms that secrete cellulases are numerous in forest soils. The isolation methods are classical methods using selective media. In the ideal selective medium, the enzyme substrate serves as the sole source of one of the essential elements. For instance, starch can be used as the sole carbon source to isolate microorganisms possessing amylase activity.

              To be definitively selected, the isolated strains must meet several criteria:

              • The ability to grow on a simple medium.
              • Minimal production of secondary metabolites, such as antibiotics.
              • Excretion of the enzyme in a way that allows easy separation and purification, without leading to various pollutants.
              • Non-pathogenic nature and absence of toxic compound production.
              • If the enzymatic preparation is intended for food contact, the strain must have food-grade status, meaning it belongs to the G.R.A.S. (Generally Recognized As Safe) category.

              The strain’s production capacity must be preserved, and any risk of contamination must be eliminated. To achieve this, an excessive number of successive cultures should be avoided.

              3.1.2. Composition of Media for the Production of Microbial Enzymes

              • Raw materials account for 60 to 80% of the production cost in enzyme fermentation. The composition of the medium must be carefully defined, and extensive research focuses on replacing expensive compounds with cheaper, more abundant alternatives. These compounds should be utilized as efficiently as possible to minimize waste.
              • The culture medium composition must consider the production and extraction stages. For the production of pectinase, cellulase, catalase, invertase, and β-galactosidase, the media used consist of:
                • Carbon sources: Cereal flour (soy, starch, potato, rice, bran, molasses).
                • Nitrogen sources: Fish meal, gelatin, soybean flour, bran, and peptone.
                • Growth factors: Yeast extract.

              3.1.3. Enzymes in Various Industrial Sectors

              • In nature, microorganisms use enzymes to break down proteins, starch, pectin, lipids, and other large insoluble molecules. These are reduced into monomers, which serve as sources of carbon and energy for the microorganisms themselves or other organisms in the environment.
              • These hydrolytic enzymes are typically extracellular or located on the surface of bacteria or fungi. As extracellular enzymes, they can be easily recovered from the culture medium.
              • Enzymes are used across all fermentation industries, including:
                • Food processing industries.
                • Pharmaceutical industry (antibiotics, organic acids, vitamins).
                • Biomedical industry (reagents).
                • Cleaning and decontamination industries (detergents, water, and surface treatment).
              • The production of bacterial proteases is a major industrial process in both volume and value, with over 500 tons of these enzymes produced annually.
                • They are primarily used in detergent manufacturing and cheese production.
                • Proteases used in detergents are derived from selected Bacillus amyloliquefaciens strains and are added to enhance stain removal from fabrics.
                • One major issue with using proteases in detergents is the allergenic response to bacterial proteins.


              Fig : market shares occupied by enzymes in different sectors.

              The industrial production of enzymes is obtained from industrial cultures of bacteria and fungi through fermentation. Once fermentation is complete, the enzymes are purified and then marketed in various forms: liquid, concentrated, or powder. The most widely used enzymes produced on an industrial scale are proteases and amylases.

              3.1.4. Some Examples of Microbial Enzymes:

              • Amylases: These are enzymes that hydrolyze starch. Several microbial amylases break down starch through different pathways to generate short-chain polymers (dextrins) and maltose. Other enzymes further hydrolyze dextrins and maltose into glucose. α-Amylases cleave internal α-1,4 glycosidic bonds and are produced by thermophilic bacteria of the Bacillus genus, which form endospores. Fungi such as Aspergillus species also produce these enzymes.
              • Glucoamylases cleave glucose from the non-reducing end of starch. These enzymes are commercially used for the production of fructose syrups. Fructose is sweeter than glucose and is the preferred sugar in syrups and sweetened beverages. Aspergillus niger is a producer of glucoamylase.
              • Proteases: Proteases hydrolyze proteins and peptides into their constituent units: amino acids. Alkaline proteases are used in the bleaching industry, the meat industry, and cheese production. The microorganisms used in the industrial production of proteolytic enzymes include bacteria from the Bacillus, Pseudomonas, Streptomyces, and Streptococcus genera, as well as fungi from the Penicillium and Aspergillus genera.
              • Penicillin Acylases: These enzymes are produced by various bacteria and fungi, but industrial production is carried out using selected mutant strains of E. coli. These enzymes cleave penicillin into 6-aminopenicillanic acid and phenylacetic acid. The free amine group of 6-aminopenicillanic acid can then be chemically modified to produce various semi-synthetic penicillins.
              • Taq Polymerase: This enzyme is used for polymerase chain reactions (PCR) and is produced by Thermus aquaticus, a thermophilic bacterium with an optimal growth temperature of 70°C. As a result, this enzyme is heat-stable. It is widely used in research, diagnostics, and forensic medicine.

              3.2. Ethanol

              • The technology of fermentation originated with the earliest civilizations, which exploited the ability of microorganisms to produce alcoholic beverages, bread, and cheese. During the first half of the twentieth century, the production of wine, beer, and vinegar transitioned from ancient artisanal methods to established scientific techniques. As a result, large-scale microbial processes were developed for the production of citric and lactic acids in industry. Acetone, butanol, and ethanol were also produced through fermentation.
                The production of ethanol via fermenting yeasts plays a crucial role in the economy.
              • Any material that can be converted into sugar, such as cellulose or starch, can be used to produce ethanol. Currently, commercially available ethanol is produced from sugar or starch. The main sugar-based crops are sugarcane and sugar beet. The most common starchy crops include corn, wheat, and cassava.

              To obtain bioethanol (ETBE = Ethyl tert-butyl ether), sweet plant materials such as sugarcane, sugar beets, cereals, or potatoes are processed. A treatment extracts the sugar, which, under the action of yeast, undergoes alcoholic fermentation, producing ethanol along with some by-products. Through a synthesis process involving isobutene, ethanol is transformed into ETBE or bioethanol. Bioethanol can be blended with gasoline or used in its pure form in slightly modified internal combustion engines. One liter of ethanol provides 66% of the energy supplied by one liter of gasoline. It improves hydrocarbon combustion in vehicles, thereby reducing carbon monoxide emissions.

              • 80% of global ethanol production comes from biotechnological sources. It is a promising candidate as a biofuel (or additive) and, most importantly, as a starting component for a new chemical industry that replaces petroleum-based products.

              3.2.1. Bioethanol Production Processes

              3.2.1.1. Raw Materials Used

              Ethanol is an ethyl alcohol that can be synthesized from hydrocarbons and/or biomass. However, microbial processing of biomass can produce what is known as "bioethanol." Ethanol is obtained through the fermentation of sugar-rich plants using microorganisms (yeasts, bacteria, etc.).

              3.2.1.2. Materials Rich in Polysaccharides

              Currently, bioethanol production is slightly dominated (53% of total production) by starch-based materials such as corn, wheat, and other cereals and grains. In these cases, the conversion process generally begins with the separation, cleaning, and milling of the grain. The starch is then typically converted into sugars through a high-temperature enzymatic process. The released sugars are then fermented by yeasts, and the resulting liquid is distilled to separate the bioethanol.
              It is worth noting that raw materials rich in inulin (a polymer of fructose) are an important source of fructose, which can be obtained through the action of inulinase produced by various microorganisms.

              3.2.1.3. Materials Rich in Simple Sugars

              Sugarcane and sugar beets are plants that contain a high amount of simple sugars. These sugars are extracted through milling or diffusion and can be directly fermented. After fermentation, the liquid is distilled. It is important to note that so-called "first-generation" bioethanol is derived from the fermentation of raw materials that can also be used in human or animal food chains.
              In contrast, ethanol produced from the fermentation of cellulosic materials—such as wood, leaves, and plant stems or waste products—is classified as second-generation bioethanol.


              3.2.2. Microorganisms Used in Microbial Ethanol Production

              A wide variety of microorganisms can produce ethanol from sugars, but yeasts have the best advantages and the highest potential for this production. The most commonly used yeasts are Saccharomyces cerevisiae, Saccharomyces uvarum, Schizosaccharomyces pombe, and Kluyveromyces sp., each with its own advantages and drawbacks, depending on the substrate composition and the process used.

              However, Saccharomyces cerevisiae remains the preferred choice because it offers high production efficiency and growth at low pH (down to 4), an important factor that helps prevent contamination. Additionally, this yeast serves as an experimental model with several advantages, including small size, a fully sequenced genome, ease of genetic manipulation, and extensive availability of scientific literature.

              3.3. Citric Acid

              The main organic acids derived from microbial industries are acetic acid, glutamic acid, lactic acid, and especially citric acid. Their total annual production exceeds one million tons.

              Citric acid (2-hydroxy-1,2,3-propane-tricarboxylic acid) is widely distributed in nature. It is a solid, white, colorless, and odorless substance. It plays a role in the metabolism of many animals and plants. It was isolated in crystalline form from lemon juice.

              It is an important organic acid synthesized through microbial fermentation. More than 130,000 tons are produced annually worldwide. Citric acid was originally extracted from lemons (a lemon contains 7% to 9% citric acid). In 1923, a microbial fermentation process capable of producing high levels of citric acid was developed, and its price decreased with increased production. About two-thirds of the produced and marketed citric acid is intended for food and beverages, such as soft drinks, desserts, confectionery, frozen fruits, compotes, jellies, and ice creams.

              In the pharmaceutical industry, iron citrate serves as a dietary source of iron. Citric acid is also used as a preservative for stored blood, medicines, and ointments. Citrate has also replaced polyphosphates in detergents due to the elimination of phosphates, which are environmental pollutants.

              Today, 99% of the global citric acid consumption is produced biotechnologically. Citric acid is generally produced using molasses as the preferred carbon source for the species Aspergillus niger.

              The majority of citric acid comes from fermentations in large stainless steel fermenters using strains of the fungus Aspergillus niger. Sucrose is also a substrate for citric acid production as a secondary metabolite during the idiophase. During the trophophase, mycelium is produced, and CO₂ is released. During the idiophase, glucose and fructose are directly metabolized into citric acid. Little CO₂ is produced. Under optimal conditions, about 70% of the sugar is converted into citric acid. The levels of iron and other inhibitory minerals are critical factors during fermentation. Therefore, the fermenter must be made of stainless steel or glass-lined, and the use of copper is prohibited.

              3.3.1. Microorganisms used in CA Production

              Aspergillus niger is the highly recommended industrial producer of citric acid. They flourish in sugar medium containing salts at pH 2.5-3.5 and excrete large volumes of CA. An estimated practical yield of CA is 70 % of the theoretical estimate which is 112g per 100g of sucrose. 

              Many organisms like Penicillin sp., Eupenicillin sp., Botrytis sp., Absidia sp., Ustulina vulgarisand more can also accumulate citric acid in a sugar and inorganic salt medium. Yeast species belonging to the genera of Hansenula, Candida, Torula, Saccharomyces, Pichia, etc, can produce CA from carbohydrates and n-alkanes. However, the production of CA via these organisms may not seem economical due to the accumulation of unwanted by-products like isocitric acid. A remedial approach could be the development of a mutant strain with lower aconitase activity.

              3.3.2. Industrial Production:

              o   Produced via microbial fermentation using Aspergillus niger, Escherichia coli, and other fungi or bacteria.

              o   Involves multiple regulated steps: sterilization, inoculation, media preparation, fermentation, recovery, and downstream processing.

              3.3.3. Fermentation Process :

              o   A sterilized carbon source (e.g., molasses, sucrose) is inoculated with CA-producing microorganisms in a culture medium.

              o   The inoculated substrate is transferred to a bioreactor under optimal conditions (temperature, aeration, pH) for fermentation.

              o   Microorganisms metabolize the substrate, releasing citric acid as a by-product.

              3.3.4.      Recovery and Purification :

              o   After fermentation, the broth undergoes filtration, crystallization, and drying.

              o   The final product is anhydrous white citric acid crystals for commercial use.

               

              3.3.5. Applications of Citric Acid

              3.3.5.1. Food Industry

              • It is used as an additive (in beverages, jams, etc.). In beverages, it is generally used as a refreshing or effervescent agent and as an acidulant.
              • In the manufacture of candies, the preservation of fruits, fish, ice creams, confectionery in general, sauces, fruit juices, and syrups.
              • During harvests, as an acidifier for must.
              • In white, rosé, and red wines, to adjust acidity during the production processes.
              • It can be used as a cleaning agent for stainless steel due to its sequestering power.
              • In plastics manufacturing in the form of esters.
              • In metal purification due to its chelating power.

              3.3.5.2. Pharmaceutical Industry

              • Citric acid indirectly promotes bone growth by facilitating calcium absorption and regulating the size of calcium crystals in bones.
              • Citric acid and its salts prevent blood coagulation in stored blood.
              • It is used as a rinsing solution during root canal treatments in dentistry.
              • In effervescent powders and tablets, the effervescent effect is achieved through citric acid and sodium bicarbonate.

              3.4. Antibiotics

              Approximately 10,000 different antibiotics have been characterized, and around 160 are industrially produced and marketed. Antibiotics are organic substances secreted as secondary metabolites by certain microorganisms or produced through chemical synthesis. The microorganisms capable of producing antibiotics are relatively few in number. The main groups used in the industrial production of antibiotics are filamentous bacteria of the genus Streptomyces and molds of the genera Penicillium and Cephalosporium.

              Experience has shown, however, that bacteria with a life cycle involving spore formation (endospores or other types of spores) are the most effective in producing useful antibiotics.

              Many antibiotics are currently available to the medical profession, but the search for new antibiotics continues, particularly against bacteria, fungi, viruses, and tumors. One of the major issues in the use of antibiotics and chemical therapeutics is the development of resistance in pathogenic agents. Antibiotic resistance also arises through mutation and selection processes.

              Thus, the search for new antibiotics continues to combat the resistance developing against those currently in use. It is clear that new agents effective against bacteria, fungi, viruses, or tumors are now necessary.

              3.4.1. Isolation of Antibiotic-Producing Microorganisms

              Soil has become the main reservoir of antibiotic-producing microorganisms. The vast majority of antibiotic-producing strains have been isolated from soil. However, other ecological niches also contain microorganisms with the potential to produce secondary metabolites: decaying materials, sediments, waste, marine or freshwater environments, lichens, mosses, and plants.

              One of the objectives of isolation is to search for new strains in the hope that they produce new secondary metabolites. Actinomycetes, and especially Streptomyces, are the best producers of antibiotics. However, Streptomyces have been heavily exploited. It is therefore necessary to continue isolating species from this genus while trying to find rare species.

              3.4.2. Antibiotic Production by Actinomycetes

              Actinomycetes play a very important role in the field of antibiotic biotechnology, despite the progress made in chemical synthesis. In fact, 45% of known antibiotics are naturally derived from actinomycetes, and more specifically from the Streptomyces genus, which is responsible for producing 75% of these antibiotics.

              3.4.3. Examples of Some Antibiotics Produced by Microbial Processes

              • Penicillin: This antibiotic is produced by Penicillium chrysogenum and contains a β-lactam ring, which is unusual in biological systems. This antibiotic has been used for over 50 years, and the development of resistant microorganisms has become a real problem. Semi-synthetic penicillins are more effective against microorganisms resistant to the natural product and are preferred antibiotics for clinical applications.
              • Cephalosporins: This antibiotic, also part of the β-lactam family, is produced by the fungus Cephalosporium acremonium. Cephalosporins are less toxic than penicillin and have a broader spectrum of antimicrobial activity. They are also resistant to penicillinases produced by microorganisms resistant to penicillin. Cephalosporins are produced through fermentation, and some semi-synthetic derivatives are generated by chemical modification.
              • Streptomycin: Many antibiotics are sugar derivatives, and streptomycin belongs to this group. It is produced by Streptomyces griseus. The fermentation medium used contains soy and glucose as a carbon source. Streptomycin is composed of amino sugars linked to other sugars by a glycosidic bond. Its discovery was of great medical importance because it was the first effective drug against the plague of tuberculosis. However, resistance to streptomycin has caused serious problems in tuberculosis therapy, and combinations of drugs are now administered over a specific period.
              • Erythromycin: This antibiotic belongs to the macrolide family. It has large lactone rings linked to sugars. It is produced by Streptomyces erythraeus.
              • Rifamycin: This is a macrocyclic lactone-type antibiotic produced by Nocardia mediterranei.
              • Rifampicin: It is a specific inhibitor of bacterial DNA-dependent RNA polymerase. It is used in the treatment of tuberculosis in combination with isoniazid and pyrazinamide.
              • Tetracyclines: Tetracyclines constitute a major group of antibiotics effective against both Gram-positive and Gram-negative bacteria. They are also effective against Rickettsia, Mycoplasma, Leptospira, Spirochetes, and Chlamydia. Some semi-synthetic derivatives have also been developed to counteract the problem of emerging bacterial resistance.
              • Spiramycin: This is an antibiotic belonging to the macrolide family. Macrolides are basic lipophilic molecules composed of a lactone macrocycle or aglycone. The producing microorganism is Streptomyces ambofaciens.

              3.5. Others
              Other fermentation products and their applications are presented in the following table:


              Production

              Microorganisms

              Use

              Production of Pharmacologically Active Products

              Ergotamine

              Claviceps purpurea

              Migraine

              Valiomaline

              Streptomyces, hygroscopicus

              Diabetes

              Compactin

              Penicillium citrinum

              Cholesterol

              Cyclosporin

              Tolypocladium inflatum

              Immunosuppressants

              Prednisone

              Curvularia lunata, Corynebacterium simplex

              Asthma and other allergies

              Aromas

              Anisaldehyde

              Trametes suavolens

              Anise aroma

              Geraniol

              Ceratiocystis variospora

              Rose aroma

              Methyl-phenylacetate

              Trametes odorata

              Honey aroma

              Plant hormones

              Gibberellin

              Phaeosphaeria sp.

              Breaking dormancy, flowering stimulation

              Lipids

              Aspergillus fumigatus, Mucor miehei, Penicillium spinulosum

              Food industry

              Pigments

              Beta-carotene

              Blakeslea trispora, Rhodotorula gracilis

              Colorants




            • CHAPTER 04: Application Of Biotechnologies in the Medical Field

              Chapter 04:

               Application of Biotechnologies in the Medical Field

              4.1. Hormone Production

              Biotechnologies applied to the pharmaceutical sector encompass all techniques that use living resources to design and produce active substances.

              4.1.1. What is a hormone?

              A hormone is a biological substance synthesized by special cells (endocrine cells) and directly secreted into the blood or lymph. There are different types of hormones: peptide, lipid, and steroid hormones (such as cortisol, testosterone…), which are derived from cholesterol. Hormones serve to transmit a chemical signal: they act at a distance, on a tissue or organ different from their site of secretion, which has receptors for the hormone.

              4.1.2. Examples of hormone-producing organs and the hormones they secrete:

              • The pituitary gland: The pituitary is an endocrine gland located in the brain.
                • (ACTH = adrenocorticotropic hormone, oxytocin, vasopressin, prolactin (LTH), which stimulates milk synthesis, etc.)
              • The thyroid: The thyroid is an endocrine gland that synthesizes and releases thyroid hormones into the bloodstream.
                • Thyroxine (T4) and triiodothyronine (T3). These hormones play a role in basal metabolism, for example by promoting growth and stimulating the consumption of fats and sugars.
              • The adrenal glands: adrenaline, cortisone, aldosterone, DHEA...
              • The pancreas: insulin, glucagon
              • The testicles: testosterone
              • The ovaries: estrogens, progesterone…

              4.1.3. Roles of hormones:  growth, reproduction, sleep…

              Hormones play various roles in: growth (growth hormone); homeostasis; reproduction and pregnancy (sex hormones); sleep (melatonin)...

              4.1.4. Hormones and treatments

              Hormones are also used in treatments, for example:

              • In oncology, as part of hormone therapy, since certain hormones can play a role in cell growth;
              • To treat menopause-related disorders: hormone replacement therapy; and for hormonal contraception.

              4.1.5. Plant hormones

              By extension, in plant biology, the term “phytohormone” or “plant hormone” is used to refer to molecules such as auxin, gibberellin, cytokinin, ethylene, and abscisic acid, which influence plant development.

              4.1.6. Hormone Production

              Beyond conventional fermentation techniques, genetic engineering has revolutionized the production of biologically active compounds—particularly recombinant endogenous proteins—and has significantly contributed to the development of safer and more effective therapeutics, such as recombinant human growth hormone (rhGH). Genetically modified organisms (GMOs), including transgenic plants, animals, and recombinant microorganisms, are employed either as biofactories for the synthesis of active pharmaceutical ingredients or as delivery vectors to transport these molecules directly to their target sites within the body.

              Naturally occurring hormones—such as progesterone, testosterone, estrone, and corticosteroids—can now be biosynthesized at low cost using microbial cell factories, offering a scalable and economically viable alternative to traditional extraction or chemical synthesis methods.

              4.1.7. Human Growth Hormone (HGH)

              Human Growth Hormone (HGH), used to treat pituitary deficiencies leading to dwarfism (hypopituitarism), was previously obtained by harvesting pituitary glands from deceased humans. Obtaining a sufficient quantity of the hormone was both difficult and expensive, which severely limited its use. Growth hormone extracted from animals is ineffective in humans.

              The gene responsible for growth hormone synthesis was introduced into Escherichia coli (E. coli). This genetically modified bacterium now serves as the commercial source of HGH. At one point, approximately 30,000 children in the United States were receiving this hormone.

              Thanks to biotechnology, the gene encoding human growth hormone was identified, isolated, and inserted into the genetic code of E. coli. This bacterium multiplies rapidly and can produce large quantities of the hormone safely. Initially, researchers extracted the human growth hormone gene from human cells and incorporated it into the DNA of E. coli bacteria. Industrial-scale production then takes place in large bioreactors where these genetically modified bacteria are cultivated under carefully controlled conditions to optimize growth.

              The bacteria use the human gene to synthesize authentic human growth hormone, which is subsequently extracted and purified for medical use.

              4.1.8. Biotechnology in Action: Recombinant hormone Production Using Bacterial Expression Systems

              1- The gene of interest is isolated from the human genome.

              2- It is then inserted into a bacterial plasmid.

              3-   The modified plasmid is subsequently transferred into the bacterium.

              4- The bacterium rapidly multiplies into a colony, which produces the desired human protein in large quantities

              4.1.9. Human Insulin:

              Insulin is a hormone produced by the pancreas. Insufficient insulin production leads to diabetes. Today, diabetics have access to human insulin produced through genetic engineering. Before insulin was produced using microorganisms, it was extracted from pigs or cattle. Structurally, animal insulin is not exactly the same as human insulin, making it less effective.

              Moreover, as the number of diabetes cases has continued to rise, it became necessary to find a method for producing insulin in large quantities and at low cost. First, the insulin-producing gene is isolated. Then, an expression vector—typically a plasmid—is used. This plasmid serves as the genetic carrier of the gene and is inserted into a host cell, such as the bacterium Escherichia coli. The genetically modified bacterium is cultivated in a fermenter where it automatically produces human insulin.

              With the development of genetic engineering, scientists turned to microorganisms for insulin production. Since 1984, large-scale commercial production of insulin has been carried out using genetically modified E. coli bacteria.

              In 1987, insulin production also began using the yeast Saccharomyces cerevisiae.

              Genetically engineered chloroplasts from tobacco and carrot plants have also been used to express various therapeutic proteins, such as human growth hormone, human serum albumin, interferons, and insulin-like growth factors (IGFs).

               

              4.2. Vaccine Production

              Genetically modified antigens are now a reality thanks to advances in biotechnology. These antigens offer several advantages over those extracted from pathogenic bacteria or viruses. Antigens produced by bacteria are less expensive, easier to purify, and free from contamination by other proteins.

              4.2.1. Stages of Industrial Vaccine Production

              4.2.1.1. Production of the Active Substance

              This involves producing an antigen capable of stimulating antibody production by our immune system. This antigen originates from the germ (virus, bacteria, or parasite) that causes the disease and may be:

              • A live attenuated germ (live attenuated vaccine: for example, mumps, measles, or BCG tuberculosis);
              • An inactivated germ or a fraction of it (inactivated vaccine), or a toxin;
              • Recombinant vaccines: Some vaccines are produced through genetic engineering and use an animal cell or yeast to produce the vaccine antigen (e.g., hepatitis B).

              Each vaccine type is produced through specific processes, but their manufacturing generally follows the same steps:

              1. Creation of the Germ Bank:

              This is the starting point of the process. The germ bank gathers viruses or bacteria that must maintain consistent properties to ensure quality vaccines. The germ must be thoroughly characterized, especially to confirm the absence of mutations.

              1. Cultivation and Amplification:

              Culture parameters must be precisely controlled, including duration, temperature, pressure, culture medium composition, germ quantity, aeration, etc. Some growth media are composed of cells, and some cultures are grown in chicken eggs (e.g., for flu or yellow fever).

              1. Harvesting:

               This step involves extracting the produced antigen from the culture medium.

              1. Purification and Concentration:

              This involves removing impurities from the substance and concentrating it through physical processes such as centrifugation.

              1. Inactivation of the Produced Substance (if necessary):

              Inactivation by heat or chemical agents such as formaldehyde eliminates pathogenicity while preserving immunological properties—i.e., the ability to trigger an immune response without causing disease.

              1. Preparation of Antigenic Valences:

              his step involves combining antigenic substances into a single compound, such as the three types used in the inactivated polio vaccine.

              4.2.1.2.  Pharmaceutical Formulation

              Pharmaceutical formulation results in the final product offered in pharmacies.

              1. Combining Valences for Combination Vaccines:

              Valences are combined, as in the Diphtheria – Tetanus – Poliomyelitis – Acellular Pertussis vaccine.

              1. Formulation:

              Adjuvants and stabilizers may be added: adjuvants enhance efficacy and immune response; preservatives and stabilizers improve the compound’s stability. Preservatives may be used in multi-dose presentations.

              1. Aseptic Filling:

              The product is filled into vials or syringes in a sterile (germ-free) manner.

              1. Lyophilization (if needed):

              This step removes water from the product by converting it to powder, improving stability and preservation.

              1. Packaging:

              This step includes labeling and boxing into batches, each representing a homogeneous set of doses—ranging from 50,000 to 1 million doses per batch, depending on the vaccine type.

              1. Batch Testing and Release:

              Vaccines are subject to dual quality control: by the manufacturer and by an independent authority. Only when both are satisfied are the batches released for distribution.

              1. Delivery of Batches:

              Delivered to pharmacies, hospitals, vaccination centers, etc.

              4.2.2. Various Types of Biotechnological Vaccines

              4.2.2.1. Vaccines from Yeasts

              Against Hepatitis B:

              A liver disease caused by the Hepatitis B Virus (HBV). The blood of chronically infected individuals contains a protein particle called HBs. This particle is not toxic but effectively induces anti-Hepatitis B antibody production. This protein has been cloned in Saccharomyces cerevisiae and now serves as the antigen source for human immunization.

              4.2.2.2. Vaccines from Recombinant Bacteria

              • A recombinant Mycobacterium microti vaccine increases protection against tuberculosis by inducing a T lymphocyte immune response.
              • Ten recombinant proteins from Plasmodium falciparum (malaria parasite) are produced by Escherichia coli. These proteins generate antibodies in rats.
              • Brucella abortus, a Gram-negative intracellular pathogenic bacterium, infects animals and humans through ingestion. An antigen from Brucella abortus is produced in recombinant Lactococcus lactis bacteria—this is the first step towards orally administered live vaccines against brucellosis.
              • A study is examining cancer vaccine trials. A recombinant protein combining an enzyme and a tumor-associated antigen is expressed in a recombinant Escherichia coli strain. When injected into tumor-bearing mice, the recombinant protein shows anti-tumor activity.

              4.2.2.3. Vaccines from Recombinant Viruses

              • Research on vaccines against HIV-1 (Human Immunodeficiency Virus type 1) is ongoing. Recombinant measles viruses expressing HIV-1 antigens have been developed, and their immunogenicity has been tested in animals. The aim is to create a pediatric vaccine effective against both measles and AIDS.
              • A recombinant Herpes Simplex Virus type 1 (HSV1) is used as a vaccine vector. However, immune response after vaccination is reduced in HSV1-seropositive individuals.
              • A recombinant virus expressing a stimulatory molecule infects dendritic cells and stimulates the immune system to combat cancer cell growth. It can be used in cancer immunotherapy.

              4.2.2.4. Vaccines from Transgenic Plants

              • Vaccines can be produced by transgenic plants. Studies are ongoing to develop an edible vaccine against human papillomavirus (HPV) produced in bananas. These edible or oral vaccines could be a solution for developing countries.
              • An oral vaccine against transmissible gastroenteritis virus in pigs has been developed using transgenic plants.
              • Transgenic carrots have been engineered to express a new antigen against the measles virus. This antigen could be used in the development of a new vaccine.
              • Transgenic tobacco chloroplasts are used to express antigens to develop vaccines against cholera, anthrax, plague, and tetanus.

              4.2.2.5. Genetic Vaccines

              Molecular biology advances now allow the identification of genes responsible for a microorganism’s virulence. Current research favors developing "molecular" vaccines using purified or genetically engineered antigens. These vaccines induce protective immune responses while avoiding side effects from other microorganism components. Tetanus and diphtheria vaccines are now among the most effective and safest.

              A genetic vaccine has been developed to protect against venomous snake bites. Alpha-cobratoxin is a neurotoxin found in Naja kaouthia (monocled cobra) venom. A modified gene encoding a non-toxic but immunogenic toxin provides protective immunity in mice.